Google search algorithm helps track spread of cancer


Google search algorithm helps track spread of cancer
Google ranks webpages by the likelihood that an individual would end up visiting each one randomly.
NEW YORK: The equations search engine Google employs to predict the webpages its users visit has inspired a new way to track the spread of cancer cells in the human body.

"Each of the sites where a spreading, or metastatic, tumour could show up are analogous to Web pages," said Paul Newton, a mathematician at University of Southern California.

Google ranks webpages by the likelihood that an individual would end up visiting each one randomly. These predictions are based on the trends of millions of users across the Web, the 'Live Science' reported.

It uses the "steady state distribution" to calculate the probability of someone visiting a page.

"You have millions of people wandering the Web, [and] Google would like to know what proportion are visiting any given Web page at a given time.

"It occurred to me that steady state distribution is equivalent to the metastatic tumour distribution that shows up in the autopsy datasets," Newton said.

The referred dataset contains information about autopsy patients from the 1920's to the 1940's, who died before chemotherapy was available.

By focusing on this group of patients, the researchers could track the natural progression of cancer, specifically lung cancer, without different treatments interfering with the data.

Out of fifty metastasis sites described in the autopsy reports, the scientists found that twenty-seven contained cancer that appeared to have spread from the lungs.

Just like with an individual browsing the Web, cells that break off from the original lung tumour and entered the bloodstream had a certain probability of progressing to different locations.

Following the Google's example with search results, the researchers split the sites where the lung cancer spread to into two groups into first and second order.

In first order sites, tumour cells would most likely reach them by travelling directly from the lung. Tumours are more likely to reach second order sites by colonising a first order site and then spreading to the second order location.

Researchers, using this approach, were even able to estimate the average times it takes the cancer to spread to different parts of the body, the report said.

New tech helps spot cancer spread


New tech helps spot cancer spread
Lymph nodes, located throughout the body, serve as filters that contain immune cells to fight infection and clean the blood. When cancer cells break away from a tumour, the cells can travel through the lymph system and hide in these tiny organs.
WASHINGTON: Researchers have developed a new technique that will allow surgeons to identify how far the tumour has spread and help them decide which tissue to remove in order to save healthy cells in cancer patients.

"With molecular-targeted imaging, surgeons can avoid unnecessary removal of healthy lymph nodes which is better long-term for patients," said Quyen T Nguyen, associate professor at University of California, San Diego School of Medicine. "The range of the surgeon's visual field is greatly enhanced by a molecular tool that can help achieve accurate surgical margins and detection of metastases so that no tumour is left behind," Nguyen said.

Lymph nodes, located throughout the body, serve as filters that contain immune cells to fight infection and clean the blood. When cancer cells break away from a tumour, the cells can travel through the lymph system and hide in these tiny organs.

Surgeons remove the nodes to determine if a cancer has spread. However, human nodes, only half a centimetre in size, are difficult to discern among the surrounding tissue during surgery.

Furthermore, even when surgeons are able to map the location of the nodes, there is no current technique that indicates whether or not the lymph nodes contain cancer, requiring removal of more lymph nodes than necessary.

"This research is significant because it shows real-time intra-operative detection of cancer metastases in mice. In the future, surgeons will be better able to detect and stage cancer that has spread to the patient's lymph nodes using molecules that were designed and developed at UC San Diego," he said.

The fluorescently labelled molecules, known as ratio-metric activatable cell-penetrating peptides ( RACPP), are injectable. When used in mouse models, surgeons could see where the cancer had spread with high sensitivity and specificity even when the metastatic sites were only a few millimetres in size.

Mathematicians coming of age to become the most sought after professionals

In recent times, IBM Research has been using mathematics to investigate some uniquely Indian problems like low-cost traffic speed analysis and standardisation of addresses.
In recent times, IBM Research has been using mathematics to investigate some uniquely Indian problems like low-cost traffic speed analysis and standardisation of addresses.
Sequencing a person's genome is an expensive and complicated exercise, but the benefits can be enormous if done well and quickly. You could calculate the risk of getting major diseases, develop new drugs, or provide targeted therapies. But because of the cost and difficulty, routine gene-sequencing has not started in a big way in India. Strand Life Sciences, a Bangalore-based life sciences company, decided recently to test the waters with a pilot project. It has sequenced the genome of about 20 people, and hopes to start a commercial service soon.


Such a service would have been unthinkable even two years ago. To sequence a genome quickly, the DNA has to be chopped up into bits and the pieces sequenced separately. Assembling these pieces of information into a meaningful whole is difficult, and requires special resources and mathematical techniques.

Instrumentation technology has advanced rapidly in recent times, but some of the most dramatic improvements have been in mathematical techniques.

And these have resulted in a precipitous drop in the cost of gene sequencing, which is now set to make a high impact on our lives. "Genome data is very different from other data," says Ramesh Hariharan, chief technology officer, Strand Life Sciences. "But algorithms and special mathematical techniques to deal with it have improved rapidly in the last two years."

The Plus Factor

It is a quiet revolution happening away from public view, but it is going to transform technology and business. As mathematical techniques improve, many day-to-day problems are being solved mathematically, thereby helping companies and governments take better decisions and forecast trends more accurately. Some of it is led by big data analytics companies, but the trend is deeper and more widespread than big data. A data-rich world is infinitely interesting to applied mathematicians, as they look for beautiful patterns and striking correlations among the huge amounts of data being collected every day. Says Bernard Meyerson, vice-president, IBM Research: "The magic of mathematics is the only way to discover useful information from so much data."

In recent times, IBM Research has been using mathematics to investigate some uniquely Indian problems like low-cost traffic speed analysis and standardisation of addresses. Across the world, IBM employs arguably the largest pool of mathematicians in a private organisation. They look at the world in a distinctly mathematical way, breaking down conventional business problems into equations that can be solved by modern computers. IBM is representative of a larger trend in the technology world, as private companies use mathematics increasingly to solve a variety of problems from customer acquisition to predicting infant mortality.

In the last few years, IBM has invested $15 billion in companies with such capabilities. During this period, its engineers have applied this capability to a mindboggling variety of situations. They have used mathematics to predict failures in semiconductor plants, plan marketing campaigns, understand visitor behaviour on websites, manage public water supply, and spot infections in infants well before the symptoms manifest. Apart from core industrial areas, IBM also researches topics like astrophysics, genomics and climate change because its mathematicians have seen fascinating connections between natural phenomena and its core businesses.